Genetically Modified Bacteria Break Down Plastics in Saltwater

This is a slightly modified version of an article written by Matt Shipman, Research Lead in University Communications.

Professor Nathan Crook and his colleagues have genetically engineered a marine microorganism that breaks down plastic in salt water. Specifically, the modified organism can break down polyethylene terephthalate (PET), a plastic used in everything from water bottles to clothing that is a significant contributor to microplastic pollution in oceans.

“This is exciting because we need to address plastic pollution in marine environments,” says Prof. Crook, corresponding author of a paper on the work.

“One option is to pull the plastic out of the water and put it in a landfill, but that poses challenges of its own. It would be better if we could break these plastics down into products that can be re-used. For that to work, you need an inexpensive way to break the plastic down. Our work here is a big step in that direction.”

To address this challenge, the researchers worked with two species of bacteria. The first bacterium, Vibrio natriegens, thrives in saltwater and is remarkable – in part – because it reproduces very quickly. The second bacterium, Ideonella sakaiensis, is remarkable because it produces enzymes that allow it to break down PET and eat it.

The researchers took the DNA from I. sakaiensis that is responsible for producing the enzymes that break down plastic, and incorporated that genetic sequence into a plasmid. Plasmids are genetic sequences that can replicate in a cell, independent of the cell’s own genetic machinery. In other words, you can sneak a plasmid into a foreign cell, and that cell will carry out the instructions in both its own DNA and the plasmid’s DNA. And that’s exactly what the researchers did here.

By introducing the plasmid containing the I. sakaiensis genes into V. natriegens bacteria, the researchers were able to get V. natriegens to produce the desired enzymes on the surface of the hybrid cells. The researchers then demonstrated that V. natriegens was able to break down PET in a saltwater environment at room temperature.

“This is scientifically exciting because this is the first time anyone has reported successfully getting V. natriegens to express foreign enzymes on the surface of its cells,” Crook says.

“From a practical standpoint, this is also the first genetically engineered organism that we know of that is capable of breaking down PET microplastics in saltwater,” says Tianyu Li, first author of the paper and a Ph.D. student in Prof. Crook’s research group. “That’s important, because it is not economically feasible to remove plastics from the ocean and rinse high concentration salts off before beginning any processes related to breaking the plastic down.”

“However, while this is an important first step, there are still three significant hurdles,” Crook says. “First, we’d like to incorporate the DNA from I. sakaiensis directly into the genome of V. natriegens, which would make the production of plastic-degrading enzymes a more stable feature of the modified organisms. Second, we need to further modify V. natriegens so that it is capable of feeding on the byproducts it produces when it breaks down the PET. Lastly, we need to modify the V. natriegens to produce a desirable end product from the PET – such as a molecule that is a useful feedstock for the chemical industry.

“Honestly, that third challenge is the easiest of the three,” says Crook. “Breaking down the PET in saltwater was the most challenging part.

“We are also open to talking with industry groups to learn more about which molecules would be most desirable for us to engineer the V. natriegens into producing,” Crook says. “Given the range of molecules we can induce the bacteria to produce, and the potentially vast scale of production, which molecules could industry provide a market for?”

The paper, “Breakdown of PET microplastics under saltwater conditions using engineered Vibrio natriegens,” is published open access in the AIChE Journal. The paper was co-authored by CBE associate professor Stefano Menegatti.

The work was done with support from the National Science Foundation, under grant 2029327.